Fogel GB, Porto VW, Varga G, Dow ER, Craven AM, Powers DM, Harlow HB, Su EW, Onyia JE, Su C (2008) "Evolutionary computation for discovery of composite transcription factor binding sites" Nucleic Acids Research 2008; doi: 10.1093/nar/gkn738

Ficici, S.G., Parkes, D.C., and Pfeffer, A. (2008) Learning and Solving Many-Player Games through a Cluster-Based Representation, 24th Conference on Uncertainty in Artificial Intelligence (UAI).

Ficici, S.G. and Pfeffer, A. (2008) Modeling how Humans Reason about Others with Partial Information, Seventh International Conference on Autonomous Agents and Multiagent Systems (AAMAS).

Ficici, S.G. and Pfeffer, A. (2008) Simultaneously Modeling Humans' Preferences and their Beliefs about Others' Preferences, Seventh International Conference on Autonomous Agents and Multiagent Systems (AAMAS).

Ficici, S.G. (2008) Multi-Objective Optimization and Coevolution. In J. Knowles, D. Corne and K. Deb, editors, Multi-Objective Problem Solving from Nature: From Concepts to Applications. Springer, 2008.

Hecht D and Fogel GB (2008) "Computational Intelligence Methods for Docking Scores," Current Computer-Assisted Drug Design, accepted.

Hecht D, Cheung M, and Fogel GB (2008) "QSAR Using Evolved Neural Networks for the Inhibition of Mutant PfDHFR by Pyrimethamine Derivatives," BioSystems, Vol. 92(1):10-15 link to article

Davis N, Biddlecom N, Hecht D, Fogel GB (2008) "On the Relationship Between GC Content and the Number of Predicted MicroRNA Binding Sites by MicroInspector," Computational Biology and Chemistry, Vol. 32, pp. 222-226 (.pdf)

Fogel GB (2008) "Computational Intelligence Approaches for Pattern Discovery in Biological Systems," Briefings in Bioinformatics, (invited paper as part of a special issue on "Critical Technologies in Bioinformatics"), link to article, Vol. 9(4), pp. 307-16 (.pdf)

Fogel GB, Bullinger E, Su S-F, and Azuaje F (2008) "Guest Editorial: Special Section on Machine Intelligence Approaches to Systems Biology," IEEE Systems, Man, and Cybernetics- Part B: Cybernetics, Vol. 38(1), pp. 2-4 (.pdf)

Fogel GB, Cheung M, Pittman E, Hecht D (2008) "Modeling the
Inhibition of Quadruple Mutant Plasmodium falciparum Dihydrofolate
Reductase by Pyrimethamine Derivatives," J. Comput. Aided. Mol. Des.
Vol. 22(1):29-38 (.pdf)

Fogel GB, Cheung M, Pittman E, Hecht D (2008) "In silico Screening
Against Wild-type and Mutant Plasmodium falciparum Dihydrofolate
Reductase," J. Mol. Graph. Model. Vol. 26(7):1145-1152 link to article

Lamers S, Salemi M, McGrath M, Fogel GB (2008) "Prediction of R5, X4, and R5X4 HIV-1 Co-receptor Usage with Evolved Neural Networks," IEEE/ACM Transactions on Computational Biology and Bioinformatics. Apr.-Jun. Vol. 5(2), pp. 291-300 (.pdf)

Landers M, Wenrich L, Brooks M, Fogel G, Wiederholt K, and Adams C (2008) NCode(TM) miRNA Analysis Platform for Identification of Novel microRNAs in Tissue Samples, Keystone Symposia, Whistler, CO.

Cheung M and Fogel GB (2008) "Classification of Mouse fRNA Genes Using Evolved Neural Networks," 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, Sun Valley, ID (.pdf)

Cheung M, Johnson S, Hecht D, and Fogel GB (2008) "Quantitative Structure-Property Relationships for Drug Solubility Prediction Using Evolved Neural Networks," 2008 IEEE Congress on Evolutionary Computation, Hong Kong, China (.pdf)

Anand A, Fogel G, Pugal G, Suganthan PN (2008) Prediction of Transcription Factor Families Using DNA Sequence Features, 3rd IAPR Workshop on Pattern Recognition in Bioinformatics 2008, Melbourne, Australia, pp. 154-164 (.pdf)

Fogel GB, Corne DW, Pan Y (co-editors) (2008) Computational Intelligence in Bioinformatics, Wiley-IEEE Press, New York.