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Publications

Title

Fogel GB, Lamers SL, Levine AJ, Valdes-Sueiras M, McGrath MS, Shapshak P, Singer EJ (2014) "Factors Related to HIV-Associated Neurocognitive Impairment Differ with Age," J. Neurovirology, accepted.
Hinton A, Hunter S, Afrikanova I, Jones GA, Lopez AD, Fogel GB, Hayek A, King CC (2014) "sRNA-seq Analysis of Human Embryonic Stem Cells and Definitive Endoderm Reveal Differentially Expressed MicroRNAs and Novel isomiRs with Distinct Targets," May 8. doi: 10.1002/stem.1739. [Epub ahead of print].
Lamers SL, Fogel GB, Nolan DJ, McGrath MS, Salemi M (2014) "HIV-Associated Neuropathogenesis: A Systems Biology Perspective for Modeling and Therapy," BioSystems. 119:53-61.
Sahugun J, Millar C, Metzger RP, Fogel GB, Hecht D (2014) "Modeling Antibiotic Drug Resistance," Annual West Regional Meeting of the National Organization for the Professional Advancement of Black Chemists and Chemical Engineers (NOBCChE), San Diego, CA.
Rife BD, Fogel GB, Lamers SL, Norstrom MM, Nolan DJ, Salemi M (2014) "Selective Pressure at the Level of Structured RNA for HIV-1 P24: The need for Quantitative Selection Measures," Structural Biology Related to HIV/AIDS - 2014, Bethesda, Maryland.
Fogel GB, Rife BD, Lamers SL, Nolan DJ, Salemi M (2014) "RNA Secondary Structure of HIV-1 gag Using Phylodynamics and Covariation Analysis," Structural Biology Related to HIV/AIDS - 2014, Bethesda, Maryland.
Lamers SL, Nolan DJ, Rife BD, Fogel GB, Burdo TH, Williams KC, Salemi M (2014) "SIV Dynamics in the CD8-Depleted vs. Non-CD8-Depleted Rhesus Macaque Model for NeuroAIDS7", CROI 2014, Boston, MA.
Lamers SL, Fogel GB, McGrath MS (2014) "Evolved Neural Networks for the Identification of Unique HIV Sequence Subpopulations," 21st Annual HIV Dynamics and Evolution Conference, Tuscon, AZ.
Rife BD, Lamers SL, Fogel GB, Norstrom MM, Hecht FM, Nolan DJ, Karlsson A, Salemi M (2014) "Mapping of HIV-1 Phylodynamic Patterns onto p24 RNA Secondary Structure," 2014 Conference on Retroviruses and Opportunistic Infections (CROI 2014), Boston, MA.
Fogel GB, Liu ES, Salemi M, Lamers SL, McGrath M (2014) "Evolved Neural Networks for HIV-1 Co-receptor Identification,"2014 IEEE Congress on Evolutionary Computation (IEEE CEC 2014), Beijing, China.
Delos Reyes B, Le T, Metzger RP, Fogel GB, Hecht D, Bergdahl BM (2014) "Structure-Based Analysis of Bacillales Dihydrofolate Reductase Evolution," 26th Annual CSU Biotechnology Symposium, Santa Clara, CA.
Calderon A, Islas C, Metzger RP, Fogel GB, Hecht D, Bergdahl BM (2014) "Predictive Structure-Based Models of Evolved Drug Resistance", 26th Annual CSU Biotechnology Symposium, Santa Clara, CA.